Back to main page

Job Status
Workflow MOLECULAR-LIBRARYSEARCH-V2 (version release_28)
Status
Traceback (most recent call last): File "/data/ccms-gnps/tools/molecularsearch/release_28/getGNPS_library_annotations.py", line 208, in <module> main() File "/data/ccms-gnps/tools/molecularsearch/release_28/getGNPS_library_annotations.py", line 205, in main enrich_output(input_result_filename, output_result_filename) File "/data/ccms-gnps/tools/molecularsearch/release_28/getGNPS_library_annotations.py", line 16, in enrich_output input_results_df = pd.read_csv(input_filename, sep="\t") File "/data/ccms-gnps/tools/miniconda3_gamma/lib/python3.7/site-packages/pandas/io/parsers.py", line 676, in parser_f return _read(filepath_or_buffer, kwds) File "/data/ccms-gnps/tools/miniconda3_gamma/lib/python3.7/site-packages/pandas/io/parsers.py", line 448, in _read parser = TextFileReader(fp_or_buf, **kwds) File "/data/ccms-gnps/tools/miniconda3_gamma/lib/python3.7/site-packages/pandas/io/parsers.py", line 880, in __init__ self._make_engine(self.engine) File "/data/ccms-gnps/tools/miniconda3_gamma/lib/python3.7/site-packages/pandas/io/parsers.py", line 1114, in _make_engine self._engine = CParserWrapper(self.f, **self.options) File "/data/ccms-gnps/tools/miniconda3_gamma/lib/python3.7/site-packages/pandas/io/parsers.py", line 1891, in __init__ self._reader = parsers.TextReader(src, **kwds) File "pandas/_libs/parsers.pyx", line 532, in pandas._libs.parsers.TextReader.__cinit__ pandas.errors.EmptyDataError: No columns to parse from file Tool execution terminates abnormally with exit code [1]
Userburdekin (gengning.chen@uqconnect.edu.au), uq
Title
Y1.6
Date Created 2022-03-31 02:36:52.0
Execution Time 18 minutes 59 seconds
Progress
Spectrum Files
burdekin/Y1.6
Spectral Library
speclibs/GNPS-SAM-SIK-KANG-LEGACY-LIBRARY/GNPS-SAM-SIK-KANG-LEGACY-LIBRARY.mgf
speclibs/CASMI/CASMI.mgf
speclibs/GNPS-SCIEX-LIBRARY/GNPS-SCIEX-LIBRARY.mgf
speclibs/MONA/MONA.mgf
speclibs/GNPS-NIH-CLINICALCOLLECTION2/GNPS-NIH-CLINICALCOLLECTION2.mgf
speclibs/GNPS-SELLECKCHEM-FDA-PART1/GNPS-SELLECKCHEM-FDA-PART1.mgf
speclibs/GNPS-COLLECTIONS-PESTICIDES-NEGATIVE/GNPS-COLLECTIONS-PESTICIDES-NEGATIVE.mgf
speclibs/LDB_POSITIVE/LDB_POSITIVE.mgf
speclibs/BIRMINGHAM-UHPLC-MS-NEG/BIRMINGHAM-UHPLC-MS-NEG.mgf
speclibs/GNPS-NIH-NATURALPRODUCTSLIBRARY/GNPS-NIH-NATURALPRODUCTSLIBRARY.mgf
speclibs/GNPS-NIH-CLINICALCOLLECTION1/GNPS-NIH-CLINICALCOLLECTION1.mgf
speclibs/BERKELEY-LAB/BERKELEY-LAB.mgf
speclibs/MMV_POSITIVE/MMV_POSITIVE.mgf
speclibs/GNPS-NIH-NATURALPRODUCTSLIBRARY_ROUND2_NEGATIVE/GNPS-NIH-NATURALPRODUCTSLIBRARY_ROUND2_NEGATIVE.mgf
speclibs/GNPS-SELLECKCHEM-FDA-PART2/GNPS-SELLECKCHEM-FDA-PART2.mgf
speclibs/PNNL-LIPIDS/PNNL-LIPIDS-NEGATIVE.mgf
speclibs/PNNL-LIPIDS/PNNL-LIPIDS-POSITIVE.mgf
speclibs/GNPS-NIST14-MATCHES/GNPS-NIST14-MATCHES.mgf
speclibs/IQAMDB/IQAMDB.mgf
speclibs/GNPS-IOBA-NHC/GNPS-IOBA-NHC.mgf