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Workflow MOLNETENHANCER (version release_12)
Status

GNPS request success: True Traceback (most recent call last): File "/data/ccms-gnps/tools/molnetenhancer/release_12/molnetenhancer.py", line 56, in <module> SMILES_csv, out_dict = add_Chemical_Info(gnpslibfile, directory, nap_ID=args.nap, Derep_job_ID=args.derep, Varquest_job_ID=args.varquest, derepfile=Derep_file, varquestfile=Varquest_file) File "/data/ccms-gnps/tools/molnetenhancer/release_12/chemClass2Network.py", line 82, in add_Chemical_Info gnpslib = pd.read_csv(gnpslibfile, sep='\t') File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 709, in parser_f return _read(filepath_or_buffer, kwds) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 455, in _read data = parser.read(nrows) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1069, in read ret = self._engine.read(nrows) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1839, in read data = self._reader.read(nrows) File "pandas/_libs/parsers.pyx", line 902, in pandas._libs.parsers.TextReader.read File "pandas/_libs/parsers.pyx", line 924, in pandas._libs.parsers.TextReader._read_low_memory File "pandas/_libs/parsers.pyx", line 978, in pandas._libs.parsers.TextReader._read_rows File "pandas/_libs/parsers.pyx", line 965, in pandas._libs.parsers.TextReader._tokenize_rows File "pandas/_libs/parsers.pyx", line 2208, in pandas._libs.parsers.raise_parser_error pandas.errors.ParserError: Error tokenizing data. C error: Expected 36 fields in line 450, saw 37 Tool execution terminates abnormally with exit code [1]
Userikoester (ikoester@ucsd.edu), SIO
Title
Molnetenhancer of Feature-Based Molecular Networking d7373e2add2a4e72a871a60c96fbbbc3
Date Created 2019-10-12 16:49:47.0
Execution Time 1 minute 22 seconds
Progress