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Workflow SEARCH_SINGLE_SPECTRUM (version release_28)
Status
Traceback (most recent call last): File "/data/ccms-gnps/tools/search_single_spectrum/release_28/foodomics_track.py", line 64, in <module> main() File "/data/ccms-gnps/tools/search_single_spectrum/release_28/foodomics_track.py", line 56, in main matches_df = pd.read_csv(args.matches_results, sep="\t") File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 709, in parser_f return _read(filepath_or_buffer, kwds) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 449, in _read parser = TextFileReader(filepath_or_buffer, **kwds) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 818, in __init__ self._make_engine(self.engine) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1049, in _make_engine self._engine = CParserWrapper(self.f, **self.options) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1695, in __init__ self._reader = parsers.TextReader(src, **kwds) File "pandas/_libs/parsers.pyx", line 565, in pandas._libs.parsers.TextReader.__cinit__ pandas.errors.EmptyDataError: No columns to parse from file Tool execution terminates abnormally with exit code [1]
UserDanielCR92 (daniel.alvaradovillalobos@ucr.ac.cr), University of Costa Rica
Title
MASST Hxo1h F2.6.2
Date Created 2021-03-21 21:56:17.0
Execution Time 0 seconds
Progress
Spectral Library
speclibs/MIADB/MIADB.mgf
speclibs/BILELIB19/BILELIB19.mgf
speclibs/GNPS-NIH-NATURALPRODUCTSLIBRARY_ROUND2_POSITIVE/GNPS-NIH-NATURALPRODUCTSLIBRARY_ROUND2_POSITIVE.mgf
speclibs/GNPS-COLLECTIONS-PESTICIDES-NEGATIVE/GNPS-COLLECTIONS-PESTICIDES-NEGATIVE.mgf
speclibs/MASSBANK/MASSBANK.mgf
speclibs/UM-NPDC/UM-NPDC.mgf
speclibs/GNPS-NIH-CLINICALCOLLECTION1/GNPS-NIH-CLINICALCOLLECTION1.mgf
speclibs/HMDB/HMDB.mgf
speclibs/DEREPLICATOR_IDENTIFIED_LIBRARY/DEREPLICATOR_IDENTIFIED_LIBRARY.mgf
speclibs/GNPS-SELLECKCHEM-FDA-PART1/GNPS-SELLECKCHEM-FDA-PART1.mgf
speclibs/RESPECT/RESPECT.mgf
speclibs/GNPS-FAULKNERLEGACY/GNPS-FAULKNERLEGACY.mgf
speclibs/MMV_NEGATIVE/MMV_NEGATIVE.mgf
speclibs/MASSBANKEU/MASSBANKEU.mgf
speclibs/GNPS-LIBRARY/GNPS-LIBRARY.mgf
speclibs/GNPS-PRESTWICKPHYTOCHEM/GNPS-PRESTWICKPHYTOCHEM.mgf
speclibs/GNPS-MSMLS/GNPS-MSMLS.mgf
speclibs/GNPS-EMBL-MCF/GNPS-EMBL-MCF.mgf
speclibs/PSU-MSMLS/PSU-MSMLS.mgf
speclibs/GNPS-IOBA-NHC/GNPS-IOBA-NHC.mgf