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Workflow MOLECULAR-LIBRARYSEARCH-GC (version release_14)
Status

Traceback (most recent call last): File "/data/ccms-gnps/tools/molecularsearch-gc/release_14/add_mshub_data.py", line 59, in <module> main() File "/data/ccms-gnps/tools/molecularsearch-gc/release_14/add_mshub_data.py", line 51, in main quant_table_df = pd.read_csv(args.quantTable, skiprows=[0, 2, 3]) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 709, in parser_f return _read(filepath_or_buffer, kwds) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 449, in _read parser = TextFileReader(filepath_or_buffer, **kwds) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 818, in __init__ self._make_engine(self.engine) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1049, in _make_engine self._engine = CParserWrapper(self.f, **self.options) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1695, in __init__ self._reader = parsers.TextReader(src, **kwds) File "pandas/_libs/parsers.pyx", line 402, in pandas._libs.parsers.TextReader.__cinit__ File "pandas/_libs/parsers.pyx", line 718, in pandas._libs.parsers.TextReader._setup_parser_source FileNotFoundError: File b'' does not exist Tool execution terminates abnormally with exit code [1]
Userrobinschmid (robinschmid@uni-muenster.de), WWU Muenster
Title
[GC] mzmine export test
Date Created 2019-11-05 11:28:31.0
Execution Time 13 minutes 55 seconds
Progress
Deconvolved EI Spectra MGF File
robinschmid/gc/20191105_kovats_dro.mgf
Spectral Library
staticlibs/WILEY_EI_11/w11main1_library.mgf
staticlibs/WILEY_EI_11/w11re_library.mgf
staticlibs/WILEY_EI_11/w11del_library.mgf
staticlibs/WILEY_EI_11/w11main2_library.mgf
staticlibs/NIST_EI_14/NIST_GC_EI_MAX_LIBRARY.mgf
staticlibs/NIST_WILEY_KOVATS_LIBRARY_FILE/kovats_library_file.csv
Feature Quantification Table
robinschmid/gc/20191105_kovats_dro_quant.csv
Input Carbon Marker File (Optional)
robinschmid/gc/kovats_dro_by_mzmine.csv