DEBUG: main_execmodule.cpp : 154 DEBUG: ExecSpecProtAlign.cpp : 219 DEBUG: ExecSpecTagGen.cpp : 20 DEBUG: ExecSpecTagGen.cpp : 20 DEBUG: ExecPenaltyGen.cpp : 26 DEBUG: ExecPenaltyGen.cpp : 26 DEBUG: main_execmodule.cpp : 158 DEBUG: main_execmodule.cpp : 169 DEBUG: main_execmodule.cpp : 179: jobDoneFile = ExecMolecularParallelPairs__results.param DEBUG: main_execmodule.cpp : 228: NORMAL EXECUTION DEBUG: main_execmodule.cpp : 229 DEBUG: ExecMolecularParallelPairs.cpp : 174: Loading MS2 spectra.. specs_ms/specs_ms.mgf DEBUG: ExecMolecularParallelPairs.cpp : 179: m_inputSpectraMS2->size() = 4118172 DEBUG: ExecMolecularParallelPairs.cpp : 185 DEBUG: main_execmodule.cpp : 238 DEBUG: main_execmodule.cpp : 242 DEBUG: ExecMolecularParallelPairs.cpp : 61: NORMALIZING PEAKS DEBUG: ExecMolecularParallelPairs.cpp : 88: minNumMatchedPeaks = 6 DEBUG: ExecMolecularParallelPairs.cpp : 89: minRatio = 0.4 DEBUG: ExecMolecularParallelPairs.cpp : 90: peakTol = 0.5 DEBUG: ExecMolecularParallelPairs.cpp : 91: pmTol = 2 DEBUG: ExecMolecularParallelPairs.cpp : 98: startBaseIdx = 2208271 DEBUG: ExecMolecularParallelPairs.cpp : 99: endBaseIdx = 2267953 DEBUG: ExecMolecularParallelPairs.cpp : 114: Computing alignments between spectra 2208271:2267953 and all others in the dataset. DEBUG: AlignmentUtils.cpp : 1057: minCosine = 0.7 DEBUG: AlignmentUtils.cpp : 1058: minMatchedIntensity = 0.4 DEBUG: AlignmentUtils.cpp : 1059: minNumMatchedPeaks = 6 DEBUG: AlignmentUtils.cpp : 1060: maxPMdiff = 9999 DEBUG: AlignmentUtils.cpp : 1076: Parent masses histogram has 158684 bins with a total of 4118172 entries DEBUG: AlignmentUtils.cpp : 1112: baseSpectraIdx.size() = 59683 DEBUG: AlignmentUtils.cpp : 1113: specSet.size() = 4118172 DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208271... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208272... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208273... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208274... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208275... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208276... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208277... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208278... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208279... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208280... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208281... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208282... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208283... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208284... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208285... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208286... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208287... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208288... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208289... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208290... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208291... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208292... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208293... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208294... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208295... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208296... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208297... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208298... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208299... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208300... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208301... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208302... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208303... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208304... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208305... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208306... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208307... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208308... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208309... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208310... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208311... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208312... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208313... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208314... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208315... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208316... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208317... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208318... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208319... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208320... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208321... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208322... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208323... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208324... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208325... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208326... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208327... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208328... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208329... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208330... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208331... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208332... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208333... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208334... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208335... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208336... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208337... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208338... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208339... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208340... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208341... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208342... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208343... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208344... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208345... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208346... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208347... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208348... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208349... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208350... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208351... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208352... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208353... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208354... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208355... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208356... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208357... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208358... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208359... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208360... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208361... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208362... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208363... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208364... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208365... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208366... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208367... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208368... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208369... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208370... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208371... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208372... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208373... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208374... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208375... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208376... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208377... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208378... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208379... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208380... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208381... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208382... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208383... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208384... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208385... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208386... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208387... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208388... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208389... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208390... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208391... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208392... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208393... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208394... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208395... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208396... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208397... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208398... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208399... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208400... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208401... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208402... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208403... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208404... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208405... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208406... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208407... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208408... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208409... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208410... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208411... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208412... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208413... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208414... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208415... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208416... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208417... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208418... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208419... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208420... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208421... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208422... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208423... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208424... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208425... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208426... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208427... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208428... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208429... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208430... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208431... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208432... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208433... DEBUG: AlignmentUtils.cpp : 1156: num. candidates is 1909545 DEBUG: AlignmentUtils.cpp : 1165: ... DEBUG: AlignmentUtils.cpp : 1225: done. Current number of results in memory: 12 DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208434... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208435... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208436... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208437... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208438... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208439... DEBUG: AlignmentUtils.cpp : 1156: num. candidates is 1909539 DEBUG: AlignmentUtils.cpp : 1165: ... DEBUG: AlignmentUtils.cpp : 1225: done. Current number of results in memory: 16 DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208440... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208441... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208442... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208443... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208444... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208445... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208446... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208447... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208448... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208449... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208450... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208451... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208452... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208453... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208454... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208455... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208456... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208457... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208458... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208459... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208460... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208461... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208462... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208463... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208464... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208465... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208466... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208467... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208468... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208469... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208470... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208471... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208472... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208473... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208474... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208475... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208476... DEBUG: AlignmentUtils.cpp : 1156: num. candidates is 1909502 DEBUG: AlignmentUtils.cpp : 1165: ... DEBUG: AlignmentUtils.cpp : 1225: done. Current number of results in memory: 16 DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208477... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208478... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208479... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208480... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208481... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208482... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208483... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208484... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208485... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208486... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208487... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208488... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208489... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208490... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208491... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208492... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208493... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208494... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208495... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208496... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208497... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208498... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208499... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208500... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208501... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208502... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208503... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208504... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208505... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208506... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208507... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208508... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208509... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208510... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208511... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208512... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208513... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208514... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208515... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208516... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208517... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208518... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208519... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208520... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208521... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208522... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208523... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208524... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208525... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208526... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208527... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208528... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208529... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208530... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208531... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208532... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208533... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208534... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208535... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208536... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208537... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208538... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208539... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208540... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208541... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208542... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208543... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208544... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208545... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208546... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208547... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208548... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208549... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208550... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208551... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208552... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208553... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208554... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208555... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208556... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208557... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208558... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208559... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208560... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208561... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208562... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208563... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208564... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208565... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208566... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208567... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208568... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208569... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208570... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208571... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208572... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208573... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208574... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208575... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208576... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208577... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208578... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208579... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208580... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208581... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208582... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208583... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208584... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208585... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208586... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208587... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208588... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208589... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208590... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208591... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208592... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208593... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208594... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208595... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208596... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208597... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208598... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208599... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208600... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208601... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208602... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208603... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208604... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208605... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208606... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208607... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208608... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208609... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208610... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208611... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208612... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208613... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208614... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208615... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208616... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208617... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208618... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208619... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208620... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208621... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208622... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208623... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208624... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208625... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208626... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208627... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208628... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208629... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208630... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208631... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208632... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208633... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208634... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208635... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208636... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208637... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208638... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208639... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208640... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208641... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208642... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208643... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208644... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208645... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208646... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208647... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208648... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208649... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208650... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208651... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208652... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208653... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208654... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208655... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208656... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208657... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208658... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208659... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208660... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208661... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208662... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208663... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208664... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208665... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208666... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208667... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208668... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208669... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208670... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208671... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208672... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208673... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208674... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208675... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208676... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208677... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208678... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208679... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208680... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208681... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208682... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208683... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208684... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208685... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208686... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208687... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208688... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208689... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208690... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208691... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208692... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208693... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208694... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208695... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208696... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208697... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208698... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208699... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208700... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208701... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208702... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208703... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208704... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208705... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208706... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208707... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208708... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208709... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208710... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208711... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208712... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208713... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208714... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208715... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208716... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208717... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208718... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208719... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208720... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208721... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208722... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208723... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208724... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208725... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208726... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208727... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208728... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208729... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208730... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208731... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208732... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208733... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208734... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208735... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208736... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208737... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208738... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208739... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.cpp : 1117: Starting with spectrum 2208740... DEBUG: AlignmentUtils.cpp : 1127: (spectrum has less than 5 peaks) DEBUG: AlignmentUtils.c