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Workflow MOLECULAR-LIBRARYSEARCH-GC (version release_22)
Status

Traceback (most recent call last): File "/data/ccms-gnps/tools/molecularsearch-gc/release_22/clusterinfosummary_for_featurenetworks.py", line 262, in <module> main() File "/data/ccms-gnps/tools/molecularsearch-gc/release_22/clusterinfosummary_for_featurenetworks.py", line 258, in main process(args.params_xml, args.consensus_feature_file, metadata_files, args.mgf_filename, args.output_clusterinfo_summary) File "/data/ccms-gnps/tools/molecularsearch-gc/release_22/clusterinfosummary_for_featurenetworks.py", line 134, in process quantification_df = pd.read_csv(input_consensus_feature_file) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 709, in parser_f return _read(filepath_or_buffer, kwds) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 455, in _read data = parser.read(nrows) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1069, in read ret = self._engine.read(nrows) File "/data/ccms-gnps/tools/anaconda3/lib/python3.5/site-packages/pandas/io/parsers.py", line 1839, in read data = self._reader.read(nrows) File "pandas/_libs/parsers.pyx", line 902, in pandas._libs.parsers.TextReader.read File "pandas/_libs/parsers.pyx", line 924, in pandas._libs.parsers.TextReader._read_low_memory File "pandas/_libs/parsers.pyx", line 978, in pandas._libs.parsers.TextReader._read_rows File "pandas/_libs/parsers.pyx", line 965, in pandas._libs.parsers.TextReader._tokenize_rows File "pandas/_libs/parsers.pyx", line 2208, in pandas._libs.parsers.raise_parser_error pandas.errors.ParserError: Error tokenizing data. C error: Expected 1 fields in line 9, saw 2 Tool execution terminates abnormally with exit code [1]
Usermontmasis (stefano.papazian@aces.su.se), SciLifeLab / Stockholm University
Title
GC_FBMN_MSDIAL_home_exp_all_samples_0-025Da_min_pk_10_score_0-85_cos0-7_with_no_METADATA_Quant_txt
Date Created 2020-06-07 08:46:23.0
Execution Time 0 seconds
Progress